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Functional Genomics of the Solidago insect gall system
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(This work is a collaboration with Stephen Hendrix, also of the University of Iowa and the CCG.)
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Acacia Systematics | Understanding Mulga | acaciaID Interactive Key | Curriculum Vitae
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Our ability to manipulate plant growth and development for beneficial purposes depends on understanding the genetic bases of
these processes. Studies of the effects of external signals which disrupt development and cause abnormalities or disease
have revealed many useful insights into the mechanisms controlling growth and development in plants and animals. Galls
(abnormal growth structures) directed by signals from insects are an ideal model system to study how external signals
manipulate plant growth. The insect, through unidentified chemical signals, hijacks the plant development to manipulate
tissue growth into a gall that encloses, feeds and protects the larvae. Our approach utilizes functional genomics
techniques to discover patterns and evolution of key features involved in this plant-insect interaction. Our model system
utilizes two species of the plant genus Solidago, the fly Eurosta solidaginis and the moth Gnorimoschema gallaesolidaginis.
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Project Goals
- Developmental Timing:
What are the changes over time in host plant gene expression patterns that coordinate the growth of the highly structured and differentiated tissues of galls?
- Plant Genotype Effects:
Are the plant gene expression patterns different when the galling insect invades a closely related plant species?
- Insect Galler Genotype Effects:
Are the plant gene expression patterns different when infected separately by two different galling insect species that both produce stem galls?
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The Solidago-Eurosta-Gnorimoschema interaction as a model system
Solidago altissima and S. gigantea are galled by both a fly, Eurosta solidagensis and a moth,
Gnorimoschema gallaesolidaginis. These plant-animal interactions result in the formation of similar gall
morphologies on the plant stem, each housing a single maturing insect larvae.
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The Functional Genomics Approach
In order to determine the plant genes involved in the plant-animal interaction we are utilizing a functional genomics
method that does not rely on availability of a whole genome sequence or EST libraries.. This methods utilizes reciprocally
subtracted cDNA libraries for gall and stem tissues. Libraries are spotted on microarray slides and hybridized to
evaluate the success of the subtraction (identify false positives) and to determine which clones requires further
investigation by sequencing and real-time PCR.
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 Subtracted library flow chart |

Microarray hybridization of gall RNA (red) and stem RNA (green) on cDNA from the enriched gall and stem libraries. A = controls, B = upregulated in gall, C upregulated in stem. |

After sequencing cDNA clones putatively upregulated in the stem, real-time PCR was preformed. This confirmed the higher (6-fold) expression of these genes in the gall tissue. |
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| Upregulated in gall |
Putative EST homology |
# of ESTs (of 30) |
Example, homology determined by translated Genbank BLAST |
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External Response, Hormone |
4 |
ABA-responsive protein, gibberellin regulated protein, Taraxacum defense gene |
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Metabolism |
7 |
Triose phosphate isomerase, ATP synthase |
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Growth |
2 |
SAMDC1, translation elongation factor |
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Regulatory |
8 |
CCR4-NOT, G-prot, PPC2 |
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Unknown |
6 |
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| False Positive |
Housekeeping |
3 |
Ribosomal protein, chlorophyll binding protein |
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